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sequence analysis software program  (Thermo Fisher)


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    Thermo Fisher sequence analysis software program
    Sequence Analysis Software Program, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequencing+analysis+software+program/pmc09170233-110-2-6
    Average 90 stars, based on 1 article reviews
    sequence analysis software program - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Novel Dominant Splicing Variant in MPZ Associated With Unusual Charcot-Marie-Tooth Disease.
    Article Snippet: All the DNA sequences of amplicons cloned into the pTB2 vector, WT and mutant plasmids were checked by DNA sequencing (3500xl Genetic Analyzer, Thermo Fisher Scientific, and SnapGene software).

    Article Title: Novel Dominant Splicing Variant in MPZ Associated With Unusual Charcot–Marie–Tooth Disease
    Article Snippet: All the DNA sequences of amplicons cloned into the pTB2 vector, WT and mutant plasmids were checked by DNA sequencing (3500xl Genetic Analyzer, Thermo Fisher Scientific, and SnapGene software).

    Sequencing:

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol.
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    Article Title: KCNQ2 pathogenic variants in early-infantile developmental and epileptic encephalopathy in Indonesia
    Article Snippet: .. Direct sequencing was performed using a BigDye® Terminator V3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, CA, USA) and a genetic analyzer (ABI Prism 310; Applied Biosystems), with DNA Sequencing Analysis Software (Applied Biosystems). ..

    Article Title: Phytochemical profiling and anti-inflammatory activity of Gentiana lutea roots from Pollino National Park.
    Article Snippet: Ethnopharmacological relevance: Gentiana lutea L. is a mountain herb with a long-standing use in traditional European medicine, especially for digestive disorders and for its antiseptic and anti-inflammatory properties.. Its roots are also traditionally used in the preparation of regional liqueurs, particularly in Central Italy.. Aim of the study: This study aimed to characterize the phytochemical composition of Gentiana lutea roots from the Pollino National Park and assess the potential intestinal anti-inflammatory effects, using an ex vivo model, of an hydroalcoholic extract mimicking the traditional Italian Gentiana liqueur.

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    DNA Sequencing:

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol.
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    Article Title: Bi-allelic ATG12 variants impair autophagy and cause a neurodevelopmental disorder
    Article Snippet: Variants with allelic frequency >0.01 in gnomAD v3.1.2 ( gnomad.broadinstitute.org ) or with a Combined Annotation Dependent Depletion (CADD) PHRED score <15 in silico tool were discarded., Finally, prioritization of variants focused on missense, nonsense, frameshift, and small insertion/deletion variants, with an anticipated autosomal recessive (homozygous and compound heterozygous) and autosomal dominant ( de novo ) mode of inheritance. .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA). .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA).

    Article Title: On the origin of the late-flowering ppd-H1 allele in barley.
    Article Snippet: Sequence analysis and detailed examination of haplotype diversity at PPD‐H1 PCR products were purified by NucleoFast 96 PCR plates (Macherey–Nagel, Germany) and were sequenced directly on both DNA strands on Applied Biosystems (Weiterstadt, Germany) ABI Prism 3730xL sequencer using BigDye terminators. .. DNA sequences were processed by ABi dnA SequencinG AnAlySiS SoftwAre 5.2 and later manually edited by Bioedit 7.2.5 (Hall 1999). ..

    Article Title: KCNQ2 pathogenic variants in early-infantile developmental and epileptic encephalopathy in Indonesia
    Article Snippet: .. Direct sequencing was performed using a BigDye® Terminator V3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, CA, USA) and a genetic analyzer (ABI Prism 310; Applied Biosystems), with DNA Sequencing Analysis Software (Applied Biosystems). ..

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    Software:

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol.
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    Article Title: Bi-allelic ATG12 variants impair autophagy and cause a neurodevelopmental disorder
    Article Snippet: Variants with allelic frequency >0.01 in gnomAD v3.1.2 ( gnomad.broadinstitute.org ) or with a Combined Annotation Dependent Depletion (CADD) PHRED score <15 in silico tool were discarded., Finally, prioritization of variants focused on missense, nonsense, frameshift, and small insertion/deletion variants, with an anticipated autosomal recessive (homozygous and compound heterozygous) and autosomal dominant ( de novo ) mode of inheritance. .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA). .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA).

    Article Title: On the origin of the late-flowering ppd-H1 allele in barley.
    Article Snippet: Sequence analysis and detailed examination of haplotype diversity at PPD‐H1 PCR products were purified by NucleoFast 96 PCR plates (Macherey–Nagel, Germany) and were sequenced directly on both DNA strands on Applied Biosystems (Weiterstadt, Germany) ABI Prism 3730xL sequencer using BigDye terminators. .. DNA sequences were processed by ABi dnA SequencinG AnAlySiS SoftwAre 5.2 and later manually edited by Bioedit 7.2.5 (Hall 1999). ..

    Article Title: KCNQ2 pathogenic variants in early-infantile developmental and epileptic encephalopathy in Indonesia
    Article Snippet: .. Direct sequencing was performed using a BigDye® Terminator V3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, CA, USA) and a genetic analyzer (ABI Prism 310; Applied Biosystems), with DNA Sequencing Analysis Software (Applied Biosystems). ..

    Article Title: Phytochemical profiling and anti-inflammatory activity of Gentiana lutea roots from Pollino National Park.
    Article Snippet: Ethnopharmacological relevance: Gentiana lutea L. is a mountain herb with a long-standing use in traditional European medicine, especially for digestive disorders and for its antiseptic and anti-inflammatory properties.. Its roots are also traditionally used in the preparation of regional liqueurs, particularly in Central Italy.. Aim of the study: This study aimed to characterize the phytochemical composition of Gentiana lutea roots from the Pollino National Park and assess the potential intestinal anti-inflammatory effects, using an ex vivo model, of an hydroalcoholic extract mimicking the traditional Italian Gentiana liqueur.

    Article Title: Association of Lipoprotein Lipase ( LPL ) Variants rs8176337, rs303, and rs304 with Body Mass Index and Total Cholesterol
    Article Snippet: BigDye XTerminator Purification kit (Applied Biosystems, 4376486) was then used to denature the double-stranded DNA from the sequenced products. .. The samples were taken for bidirectional sequencing on an ABI 3130xl genetic analyzer, and the sequence data were analyzed using the ABI DNA Sequencing Analysis Software (version 2.5). ..

    Polymerase Chain Reaction:

    Article Title: Bi-allelic ATG12 variants impair autophagy and cause a neurodevelopmental disorder
    Article Snippet: Variants with allelic frequency >0.01 in gnomAD v3.1.2 ( gnomad.broadinstitute.org ) or with a Combined Annotation Dependent Depletion (CADD) PHRED score <15 in silico tool were discarded., Finally, prioritization of variants focused on missense, nonsense, frameshift, and small insertion/deletion variants, with an anticipated autosomal recessive (homozygous and compound heterozygous) and autosomal dominant ( de novo ) mode of inheritance. .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA). .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA).

    Purification:

    Article Title: Bi-allelic ATG12 variants impair autophagy and cause a neurodevelopmental disorder
    Article Snippet: Variants with allelic frequency >0.01 in gnomAD v3.1.2 ( gnomad.broadinstitute.org ) or with a Combined Annotation Dependent Depletion (CADD) PHRED score <15 in silico tool were discarded., Finally, prioritization of variants focused on missense, nonsense, frameshift, and small insertion/deletion variants, with an anticipated autosomal recessive (homozygous and compound heterozygous) and autosomal dominant ( de novo ) mode of inheritance. .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA). .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA).

    Electrophoresis:

    Article Title: Bi-allelic ATG12 variants impair autophagy and cause a neurodevelopmental disorder
    Article Snippet: Variants with allelic frequency >0.01 in gnomAD v3.1.2 ( gnomad.broadinstitute.org ) or with a Combined Annotation Dependent Depletion (CADD) PHRED score <15 in silico tool were discarded., Finally, prioritization of variants focused on missense, nonsense, frameshift, and small insertion/deletion variants, with an anticipated autosomal recessive (homozygous and compound heterozygous) and autosomal dominant ( de novo ) mode of inheritance. .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA). .. PCR products were purified using exo I and shrimp alkaline phosphatase (Promega) and Sanger sequenced using the ABI BigDye terminator cycle-sequencing kits v3.1 (Life Technologies, Carlsbad, CA) before capillary electrophoresis using an 3730xl DNA analyser running proprietary DNA Sequencing Analysis Software v. 5.1 (Applied Biosystems, Foster City, CA).



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